I don’t like to post work stuff, but really there is no support left from MS CMS 2001 and I am sure there must be at least one other person out there that needs help with it.
After some searching we found that the KB944338 patch for Windows 2000 Server caused CMS 2001 to no longer support adding of files to the shared resources or be able to edit templates.
A simple uninstall of this one patch will restore functionality.